Standards

Standards developed by the Systems Microscopy NoE

CellH5

CellH5 is an HDF5 data format for cell-based assays in high-content microscopy. It stores high-dimensional image data along with object measurements and inter-object relations using a graph representation. CellH5 is open source and published under the LGPL license.

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Technical report with specification of a comprehensive set of quantitative parameters (including names, mathematical definition, computation on finite-resolution pixel images. Attributes calculated for segmented cells and sub-cellular structures

Technical report with portable systems microscopy format (PSM) specifications

Tutorial document with case studies demostrating best practices for statistical data analysis of systems microscopy experiments

 

 

Seventh Framework Programme

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