Standards developed by the Systems Microscopy NoE


CellH5 is an HDF5 data format for cell-based assays in high-content microscopy. It stores high-dimensional image data along with object measurements and inter-object relations using a graph representation. CellH5 is open source and published under the LGPL license.

to CellH5 | back

Technical report with specification of a comprehensive set of quantitative parameters (including names, mathematical definition, computation on finite-resolution pixel images. Attributes calculated for segmented cells and sub-cellular structures

Technical report with portable systems microscopy format (PSM) specifications

Tutorial document with case studies demostrating best practices for statistical data analysis of systems microscopy experiments



Seventh Framework Programme

Theme by Danetsoft and Danang Probo Sayekti inspired by Maksimer